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Protein Sequence

Type Registry

Protein Sequence

representation.scientific.protein_sequence

Amino acid sequence in single-letter IUPAC notation (20 standard amino acids plus ambiguity codes).

Domain representation›scientific
Casts to VARCHAR
Scope Universal

Try it

CLI 
$ finetype infer -i "MKVLLIVGS"
→ representation.scientific.protein_sequence

DuckDB

Detect 
SELECT finetype('MKVLLIVGS');
-- → 'representation.scientific.protein_sequence'
Cast expression 
UPPER(CAST({col} AS VARCHAR))
Safe cast pipeline 
-- Normalise and cast in one step
SELECT TRY_CAST(finetype_cast(my_column) AS VARCHAR) AS clean_value
FROM my_table
WHERE finetype(my_column) = 'representation.scientific.protein_sequence';

Struct Expansion

length: LENGTH({col})
molecular_weight_estimate: LENGTH({col}) * 110

JSON Schema

finetype schema representation.scientific.protein_sequence 
{
  "$id": "https://noon.sh/schemas/representation.scientific.protein_sequence",
  "$schema": "https://json-schema.org/draft/2020-12/schema",
  "description": "Amino acid sequence in single-letter IUPAC notation (20 standard amino acids plus ambiguity codes).",
  "examples": [
    "MKVLLIVGS",
    "ACDEFGHIKLMNPQRSTVWYFL",
    "MPKTAYIAKQRQISFVKSHFSRQLEERLGLIEVQAPILSRVG"
  ],
  "pattern": "^[ACDEFGHIKLMNPQRSTVWXY*]+$",
  "title": "Protein Sequence",
  "type": "string"
}

Examples

MKVLLIVGSACDEFGHIKLMNPQRSTVWYFLMPKTAYIAKQRQISFVKSHFSRQLEERLGLIEVQAPILSRVG

Also known as

proteinpeptideamino_acid_sequence

Types in representation